+92 33 9643 5550 contact@paytime.pk
Home / NGOs & Non-Profits

Payroll Software for NGOs & Non-Profits

NGOs and non-profits in Pakistan operate on tight budgets with staff funded across multiple donor projects and grant cycles. Payroll software for NGOs needs to track costs per project, manage irregular staffing patterns, and maintain full FBR and EOBI compliance—often with minimal finance teams. PayTime automates these pressures, keeping your organisation focused on mission, not spreadsheets.

No setup fee FBR-compliant tax Credits never expire Cloud-based

Payroll challenges in NGOs & Non-Profits

The pressures that make payroll hard in your sector — and where a spreadsheet falls short.

  • Donor projects have separate budget codes and funding windows, making it hard to allocate payroll costs correctly across grants and prevent overspend.
  • You hire temporary field staff, part-time advisors, and project-based roles with varying contracts—juggling different wage types and payment schedules manually wastes time.
  • FBR registration, income tax withholding, and annual EOBI contributions create compliance risks when managed in fragmented systems or by hand.
  • Staff turnover is high in NGOs; calculating final settlements, leave encashment, and provident fund deductions accurately is error-prone and leaves you exposed.

How PayTime helps NGOs & Non-Profits

Cloud payroll software for ngos, built for Pakistan.

Multi-project cost tracking

Assign each employee or payment to a specific donor project or cost centre; PayTime aggregates spending by project so you see real-time budget usage against grant allocations.

Flexible contract management

Define part-time hours, daily rates, project durations, and honorariums without forcing all staff into one template; PayTime adapts to how NGOs actually hire.

FBR and EOBI built-in

Automatic income tax calculations, withholding schedules, and annual EOBI contribution uploads mean your organisation stays compliant without a tax specialist.

Exit settlements, fast

When a project ends or a team member leaves, PayTime calculates leave payout, provident fund, and gratuity in seconds—accurate and audit-ready.

Transparent donor reporting

Generate payroll reports segmented by project, cost code, or fund source; show donors exactly how their contribution funded your team.

Simple, credit-based pricing

One credit = one employee’s payroll for one month. Buy more, pay less. No setup fee, and credits never expire.

No. of creditsPrice per credit
1 – 100 Rs 250
101 – 1,000 Rs 200
1,001 – 3,000 Rs 150
3,001+ Best valueRs 100
Get Started

NGOs & Non-Profits payroll — FAQs

Can PayTime handle staff funded by different donors?
Yes. You assign each employee to a project or cost centre, and PayTime tracks and reports payroll spend separately for each donor, making reconciliation and donor reporting straightforward.
Do we need to calculate EOBI and income tax manually?
No. PayTime automates FBR withholding tables and EOBI contribution rules based on Pakistani regulations, so you stay compliant without spreadsheet errors.
What if our staff mix changes mid-year due to grant funding?
PayTime lets you hire, pause, or terminate staff instantly with accurate settlement calculations; you can also adjust project codes as grants shift, keeping budgets aligned to reality.

Run NGOs & Non-Profits payroll the easy way

Create your free PayTime account and process your first payroll today — no card, no contract, nothing to install.

Get Started